_images/cosmomvpa_banner.png

A multi-modal, multi-variate pattern analysis (MVPA) toolbox in Matlab / GNU Octave for cognitive neuroscientists.

CoSMoMVPA

  • State-of-the art, yet simple to use MVPA implementations.
  • Runs on the Matlab and GNU Octave platform, on MS Windows, OSX, and GNU/Linux.
  • Handles fMRI volumetric, fMRI surface-based, and MEEG data through a uniform data structure.
  • Support for a wide range of data formats.
  • Searchlights in the volume, on the surface, over sensors, time bins, and frequency bands.
  • Multiple-comparison correction using Threshold-Free Cluster Enhancement Monte Carlo simulations.
  • Extensive documentation, including a variety of runnable scripts and implementation exercises (with solutions).
  • Is Free/Open Source Software (MIT License), see http://github.com/CoSMoMVPA/CoSMoMVPA.
_images/icon_demos.png _images/icon_philosophy.png _images/icon_get_started.png _images/icon_download.png _images/icon_modules.png _images/icon_documentation.png _images/icon_exercises.png _images/icon_tips.png _images/icon_faq.png _images/icon_contact.png _images/icon_develop.png _images/icon_thanks.png

News

  • our CoSMoMVPA manuscript has been published ([OCH16]): Oosterhof, N. N., Connolly, A. C., and Haxby, J. V. (2016). CoSMoMVPA: multi-modal multivariate pattern analysis of neuroimaging data in Matlab / GNU Octave. Frontiers in Neuroinformatics, doi:10.3389/fninf.2016.00027.

Changes since last month

Summary

[DOC]    1 code documentation changes
[EXC]    1 exercise-related changes

Acknowledgements

- Peter Vavra

All changes

commit 0d330680d2324c57c9a59231d4925ca9d48e2f15
Merge: d07ced1 76c9ded
Author: Nikolaas N. Oosterhof <n.n.oosterhof@googlemail.com>
Date:   Mon Apr 30 20:53:15 2018 +0200

    Merge branch 'master' of https://github.com/CoSMoMVPA/CoSMoMVPA

commit d07ced1135963c2af4615cbd6058101851aeb4a4
Author: Nikolaas N. Oosterhof <n.n.oosterhof@googlemail.com>
Date:   Mon Apr 30 20:52:55 2018 +0200

    EXC+ACK: fix link to exercise. Thanks to #Peter Vavra# for
        reporting this

 doc/source/ex_dataset_basics.rst | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

commit 76c9ded00fde31be58121c291140ae8ad92378e8
Merge: 30d2296 85816be
Author: Nikolaas N. Oosterhof <n.n.oosterhof@googlemail.com>
Date:   Mon Apr 30 20:49:13 2018 +0200

    Merge pull request #167 from mvdoc/fix/checkexternal          FIX:
        manually filter names for cosmo_check_external for octave
        packages

commit 30d229624c80ceab37160f86de69d1509bd2e7bb
Merge: e97f914 590f6fb
Author: Nikolaas N. Oosterhof <n.n.oosterhof@googlemail.com>
Date:   Mon Apr 30 20:47:31 2018 +0200

    Merge pull request #169 from Tijl/pdist_doc_fix          DOC:
        Pdist doc fix

commit 590f6fbbd04f1d2b2c14e2da98b7b32ac20b2c2e
Author: Tijl Grootswagers <t.grootswagers@gmail.com>
Date:   Fri Apr 20 09:55:50 2018 +1000

    fix doc in dsm_measure

 mvpa/cosmo_dissimilarity_matrix_measure.m | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

commit 13f53f7f6b7640b18023de5917fab57f139bbdfe
Author: Tijl Grootswagers <t.grootswagers@gmail.com>
Date:   Fri Apr 20 09:51:58 2018 +1000

    fix doc in cosmo_pdist

 mvpa/cosmo_pdist.m | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

commit e97f914b6da614594846ccbfc94899e16199f5a7
Author: Nikolaas N. Oosterhof <n.n.oosterhof@googlemail.com>
Date:   Sat Apr 7 08:32:19 2018 +0200

    MSC: update contact information

 AUTHOR                 | 2 +-
 doc/source/contact.rst | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)