.. _`matindex_run`: ================= Runnable examples ================= .. toctree:: :maxdepth: 2 :hidden: matlab/run_anatomical_dataset_basics matlab/run_bad_double_dipping_analysis matlab/run_classify_lda matlab/run_classify_naive_bayes matlab/run_classify_svm matlab/run_compare_dsm matlab/run_correlation_measure matlab/run_cross_validation matlab/run_crossvalidation_measure matlab/run_crossvalidation_searchlight matlab/run_dataset_basics matlab/run_demean matlab/run_feature_selection_classifier matlab/run_fmri_correlation_searchlight_trivial matlab/run_load_datasets matlab/run_measure_searchlight matlab/run_meeg_time_generalization matlab/run_meeg_time_generalization_mcc matlab/run_meeg_timefreq_measures matlab/run_meeg_timelock_measures matlab/run_multiple_comparison_correction matlab/run_nfold_crossvalidate matlab/run_nifti_basics matlab/run_operations_on_datasets matlab/run_permutation_test matlab/run_roi_neighborhood matlab/run_rsa_visualize matlab/run_rsm_measure_searchlight matlab/run_setting_sample_attr matlab/run_sphere_offsets matlab/run_sphere_offsets_searchlight matlab/run_spherical_neighborhood_searchlight matlab/run_splithalf_correlations matlab/run_splithalf_correlations_searchlight matlab/run_splithalf_correlations_single_sub matlab/run_surface_searchlight =============================================== =============================================================================================================================================================================================================================== ----------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **All functions** ----------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- :ref:`run_anatomical_dataset_basics` Anatomical dataset basics In this example, load a brain as a CoSMoMVPA datset and visualize it in matlab :ref:`run_bad_double_dipping_analysis` Double dipping :ref:`run_classify_lda` odd-even classification with LDA classifier :ref:`run_classify_naive_bayes` Two-class classification with naive baysian classifier :ref:`run_classify_svm` Classification using svm :ref:`run_compare_dsm` RSA Tutorial Compare DSMs :ref:`run_correlation_measure` Exercise with cosmo_correlation_measure Split-half correlation analysis using cosmo_correlation_measure :ref:`run_cross_validation` Cross validation example with multiple classifiers This example runs cross validation and shows confusion matrix using multiple classifiers :ref:`run_crossvalidation_measure` Cross validation measure example This example runs cross validation with the cosmo_crossvalidation_measure function, using a classifier with n-fold crossvalidation. It shows the confusion matrices using multiple classifiers :ref:`run_crossvalidation_searchlight` Crossvalidation searchlight :ref:`run_dataset_basics` Dataset basics :ref:`run_demean` Example of de-meaning :ref:`run_feature_selection_classifier` An example of using feature selection with a classifier :ref:`run_fmri_correlation_searchlight_trivial` Demo: fMRI searchlights with split-half correlation :ref:`run_load_datasets` Dataset Basics Load datasets using cosmo_fmri_dataset :ref:`run_measure_searchlight` Searchlight using a data measure :ref:`run_meeg_time_generalization` MEEG time generalization in a region (in space-time) of interest :ref:`run_meeg_time_generalization_mcc` MEEG time generalization multiple comparison correction This example shows MVPA analyses performed on MEEG data. :ref:`run_meeg_timefreq_measures` MEEG time-frequency searchlight :ref:`run_meeg_timelock_measures` MEEG time-lock searchlight :ref:`run_multiple_comparison_correction` Multiple comparison correction with Threshold-Free Cluster Enhancement :ref:`run_nfold_crossvalidate` n-fold cross-validation classification with LDA classifier :ref:`run_nifti_basics` NIFTI basics In this example, load a brain and visualize it in matlab :ref:`run_operations_on_datasets` Dataset Basics Run operations on datasets :ref:`run_permutation_test` Permutation test example :ref:`run_roi_neighborhood` ROI neighborhood example :ref:`run_rsa_visualize` RSA Visualize :ref:`run_rsm_measure_searchlight` Searchlight for representational similarity analysis :ref:`run_setting_sample_attr` Dataset Basics (setting sample attributes) :ref:`run_sphere_offsets` Show sphere offsets for used in spherical neighborhood :ref:`run_sphere_offsets_searchlight` Searchlight analysis in the volume :ref:`run_spherical_neighborhood_searchlight` Spherical searchlight this example implements a spherical searchlight using cosmo_spherical_neighborhood and performs crossvalidation with a nearest neigh classifier :ref:`run_splithalf_correlations` roi-based MVPA with group-analysis :ref:`run_splithalf_correlations_searchlight` Volumetric fMRI Searchlight :ref:`run_splithalf_correlations_single_sub` Roi-based MVPA for single subject (run_split_half_correlations_single_sub) :ref:`run_surface_searchlight` Demo: fMRI surface-based searchlights with LDA classifier =============================================== ===============================================================================================================================================================================================================================