_images/cosmomvpa_banner.png

A multi-modal, multi-variate pattern analysis (MVPA) toolbox in Matlab / GNU Octave for cognitive neuroscientists.

CoSMoMVPA

  • State-of-the art, yet simple to use MVPA implementations.
  • Runs on the Matlab and GNU Octave platform, on MS Windows, OSX, and GNU/Linux.
  • Handles fMRI volumetric, fMRI surface-based, and MEEG data through a uniform data structure.
  • Support for a wide range of data formats.
  • Searchlights in the volume, on the surface, over sensors, time bins, and frequency bands.
  • Multiple-comparison correction using Threshold-Free Cluster Enhancement Monte Carlo simulations.
  • Extensive documentation, including a variety of runnable scripts and implementation exercises (with solutions).
  • Is Free/Open Source Software (MIT License), see http://github.com/CoSMoMVPA/CoSMoMVPA.
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News

  • our CoSMoMVPA manuscript has been published ([OCH16]): Oosterhof, N. N., Connolly, A. C., and Haxby, J. V. (2016). CoSMoMVPA: multi-modal multivariate pattern analysis of neuroimaging data in Matlab / GNU Octave. Frontiers in Neuroinformatics, doi:10.3389/fninf.2016.00027.

Changes since last month

Summary

[ENH]    3 enhancements
[TST]    1 unit or doctest changes

Acknowledgements

- James Keidel

All changes

commit edb9e9280b18b848be292fd6042e1c913965edfe
Author: Nikolaas N. Oosterhof <n.n.oosterhof@googlemail.com>
Date:   Fri Jul 21 16:04:38 2017 +0200

    FAQ: add entry about distributing cosmo_montecarlo_cluster_stat

 doc/source/faq.rst | 119 +++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 119 insertions(+)

commit 4c49646de475b68f3a657a5d0932b30ea3b4b687
Merge: 98dada6 7057e2b
Author: Nikolaas N. Oosterhof <n.n.oosterhof@googlemail.com>
Date:   Fri Jul 21 15:20:04 2017 +0200

    Merge branch 'master' of https://github.com/CoSMoMVPA/CoSMoMVPA

commit 7057e2b320e9759126538710aabd68e82d107a3b
Merge: 0a7c46f 4efb8ca
Author: Nikolaas N. Oosterhof <n.n.oosterhof@googlemail.com>
Date:   Tue Jul 11 19:24:29 2017 +0200

    Merge pull request #151 from
        nno/_enh/warning_when_no_default_params_corr_measure
        ENH+ACK: show warning when using cosmo_correlation_measure
        with non-default settings…

commit 4efb8ca86b83f642de6603fe0090ce1715bfc139
Author: Nikolaas N. Oosterhof <nikolaas.oosterhof@unitn.it>
Date:   Tue Jul 11 15:07:33 2017 +0200

    ENH+ACK: show warning when using cosmo_correlation_measure with
        different settings than default. Thanks to #James Keidel# for
        suggesting this feature

 mvpa/cosmo_correlation_measure.m | 27 ++++++++++++++++
 tests/test_correlation_measure.m | 68 ++++++++++++++++++++++++++++++++++++++++
 2 files changed, 95 insertions(+)

commit 0a7c46fe6540ad54ff136045b6fa54e78cdc022d
Merge: a156444 7804527
Author: Nikolaas N. Oosterhof <n.n.oosterhof@googlemail.com>
Date:   Mon Jul 10 17:36:04 2017 +0200

    Merge pull request #149 from nno/_enh/check_dataset
        ENH+TST: check that input is dataset structure

commit 78045275a428060db286703128d4c977670a880f
Merge: 89d9e24 a156444
Author: Nikolaas N. Oosterhof <nikolaas.oosterhof@unitn.it>
Date:   Mon Jul 10 15:44:42 2017 +0200

    Merge branch 'master' into _enh/check_dataset