CoSMoMVPA unit tests

All functions

test align

tests for cosmo_align

test anova feature selector

tests for cosmo_anova_feature_selector

test average samples

tests for cosmo_average_samples

test balance dataset

tests for cosmo_average_samples

test balance partitions

tests for cosmo_balance_partitions

test cartprod

tests for cosmo_cartprod

test check dataset

tests for cosmo_check_dataset

test check external

tests for cosmo_check_external

test check neighborhood

tests for cosmo_check_neighborhood

test check partitions

tests for cosmo_check_partitions

test chunkize

tests for cosmo_chunkize

test classify

tests for cosmo_classify_* functions

test cluster neighborhood

tests for cosmo_cluster_neighborhood

test clusterize

tests for cosmo_clusterize

test config

tests for cosmo_config

test confusion matrix

tests for cosmo_confusion_matrix

test convert neighborhood

tests for cosmo_convert_neighborhood

test corr

tests for cosmo_corr

test correlation measure

tests for cosmo_correlation_measure

test cosmo dataset operations

tests for slicing and stacking

test cosmo fmri dataset

tests for cosmo_fmri_dataset

test cosmo notify test skipped

tests for cosmo_align

test cosmo skip test if no external

tests for cosmo_align

test cross neighborhood

tests for cosmo_cross_neighborhood

test crossvalidate

tests for test_crossvalidate

test crossvalidation measure

tests for cosmo_crossvalidation_measure

test dim find

tests for cosmo_dim_find

test dim generalization measure

tests for cosmo_dim_generalization_measure

test dim insert

tests for cosmo_dim_insert

test dim match

tests for cosmo_dim_match

test dim prune

tests for cosmo_dim_prune

test dim remove

tests for cosmo_dim_remove

test dim rename

tests for cosmo_dim_rename

test dim slice

tests for cosmo_dim_slice

test dim transpose

tests for cosmo_dim_transpose

test dir

tests for cosmo_dir

test disp

tests for cosmo_disp

test dissimilarity matrix measure

tests for cosmo_dissimilarity_matrix_measure

test distatis

tests for cosmo_distatis

test external neuroelf

regression tests for external “neuroelf” toolbox

test external surfing

regression tests for external “surfing” toolbox

test find local extrema

tests for cosmo_find_local_extrema

test flatten

tests for cosmo_flatten

test fmri convert xform

tests for cosmo_fmri_convert_xform

test fmri dataset

tests for cosmo_fmri_dataset

test fmri deoblique

tests for cosmo_fmri_deoblique

test fmri io

tests for fmri input/output

test fmri orientation

tests for cosmo_fmri_orientation

test fx

tests for cosmo_fx

test independent samples partitioner

tests for cosmo_independent_samples_partitioner

test index unique

tests for cosmo_index_unique

test interval neighborhood

tests for cosmo_interval_neighborhood

test isequaln

tests for cosmo_isequaln

test isfield

tests for cosmo_isfield

test map pca

tests for cosmo_map_pca

test mask dim intersect

tests for test_mask_dim_intersect

test match

tests for cosmo_match

test measure clusters

tests for cosmo_measure_clusters

test meeg baseline correct

tests for cosmo_meeg_baseline_correct

test meeg chan neighborhood

tests for cosmo_meeg_chan_neighborhood

test meeg chan neighbors

tests for cosmo_meeg_chan_neighbors

test meeg chantype

tests for cosmo_meeg_chantype

test meeg find layout

tests for cosmo_meeg_find_layout

test meeg io

tests for MEEG input/output

test meeg layout collection

tests for cosmo_meeg_layout_collection

test meeg read layout

regression tests for meeg_read_layout

test meeg senstype collection

tests for cosmo_meeg_senstype_collection

test meeg source

tests for MEEG datasets in source space

test montecarlo cluster stat

tests for cosmo_montecarlo_cluster_stat

test montecarlo cluster stat distribution

probability uniformity tests for cosmo_montecarlo_cluster_stat

test montecarlo phase stat

tests for test_phase_stat

test naive bayes classifier searchlight

tests for cosmo_naive_bayes_classifier_searchlight

test neighborhood split

tests for cosmo_neighborhood_split

test normalize

tests for cosmo_normalize

test norminv

tests for cosmo_norminv

test oddeven partitioner

tests for cosmo_oddeven_partitioner

test parallel get nproc available

tests for cosmo_parallel_get_nproc_available

test parcellfun

tests for cosmo_cartprod

test partitions

tests for partitioning functions

test pca

tests for cosmo_pca

test pdist

tests for cosmo_pdist

test phase itc

tests for test_phase_itc

test phase stat

tests for test_phase_stat

test plot slices

tests for plot_slices

test publish run scripts

smoke tests for publish_run_scripts (using dry-run); currently no files are actually generated by this test function

test rand

tests for cosmo_rand

test randomize targets

tests for cosmo_randomize_targets

test randperm

tests for cosmo_randperm

test remove useless data

tests for cosmo_remove_useless_data

test run tests

tests for cosmo_run_tests

test sample unique

tests for cosmo_sample_unique

test searchlight

tests for cosmo_searchlight

test show progress

tests for cosmo_show_progress

test singleton neighborhood

tests for test_singleton_neighborhood

test slice

tests for cosmo_slice

test spherical neighborhood

tests for cosmo_spherical_neighborhood

test split

tests for cosmo_split

test squareform

tests for cosmo_squareform

test stack

tests for cosmo_stack

test stat

tests for cosmo_stat

test statcode

tests for cosmo_statcode

test strjoin

tests for cosmo_strjoin

test strsplit

tests for cosmo_strsplit

test structjoin

tests for cosmo_structjoin

test surface io

tests for surface input/output

test surficial io gifti

tests for GIFTI input/output

test surficial io niml dset

tests for AFNI NIML input/output

test surficial neighborhood

tests for cosmo_surficial_neighborhood

test synthetic dataset

tests for cosmo_synthetic_dataset

test tail

tests for cosmo_tail

test target dsm corr measure

tests for cosmo_target_dsm_corr_measure

test tiedrank

tests for cosmo_tiedrank

test type

tests for cosmo_type

test vol coordinates

tests for cosmo_vol_coordinates

test vol grid convert

tests for cosmo_vol_grid_convert

test warning

tests for cosmo_warning

test wtf

tests for cosmo_wtf