function test_suite=test_meeg_senstype_collection
% tests for cosmo_meeg_senstype_collection
%
% # For CoSMoMVPA's copyright information and license terms, #
% # see the COPYING file distributed with CoSMoMVPA. #
try % assignment of 'localfunctions' is necessary in Matlab >= 2016
test_functions=localfunctions();
catch % no problem; early Matlab versions can use initTestSuite fine
end
initTestSuite;
function test_meeg_senstype_collection_
if cosmo_skip_test_if_no_external('fieldtrip')
return;
end
% get senstype properties
% order is:
% - senstype name
% - acquisition system
% - sensor type
% - number of rows in channels
% - number of columns in channels
% - first and last channel label
senstype_props=get_senstype_properties();
% test each one
n=numel(senstype_props);
clear('cosmo_meeg_senstype_collection');
stc=cosmo_meeg_senstype_collection();
stc_cached=cosmo_meeg_senstype_collection();
assertEqual(stc,stc_cached);
for k=1:n
prop=senstype_props{k};
key=prop{1};
is_required=numel(prop)>=7 && prop{7};
if isfield(stc,key)
sens=prop{2};
type=prop{3};
size_=[prop{4:5}];
labels=prop{6}(:);
assert(isfield(stc,key));
st=stc.(key);
assertEqual(st.sens,sens);
assertEqual(st.type,type);
assertEqual(size(st.label),size_);
assertEqual(st.label([1;end]),labels);
elseif is_required
error('Missing key %s',key);
end
end
function test_meeg_senstype_collection_ft_regr_2016june
if cosmo_skip_test_if_no_external('fieldtrip')
return;
end
% since the following commit, ft_senstype supports
% ft_senslabel('neuromag306_combined')
% but its output is different than was expected in
% cosmo_meeg_senstype_collection. In particular the recent commit
% includes the magnetometers, whereas the meeg_senstype
% does not include those. This test is added as check for
% such regressions
% FieldTrip (https://github.com/fieldtrip/fieldtrip.git)
% commit 882dba3426db583f7f4f9ac0cdf4eb3c26aaefc1
% Author: Robert Oostenveld <r.oostenveld@gmail.com>
% Date: Wed Jun 22 12:47:47 2016 +0200
%
% ENH - improve combined planar MEG sensor handling, see
% http://bugzilla.fieldtriptoolbox.org/show_bug.cgi?id=3144
stc=cosmo_meeg_senstype_collection();
label=stc.neuromag306_planar_combined.label;
assertEqual(size(label),[102 1]);
present_labels={'MEG 2642+2643','MEG 0112+0113'};
absent_labels={'MEG0111'',MEG0112','MEG0113',...
'MEG2641'',MEG2642','MEG2643'};
assert(all(cosmo_match(present_labels,label(:))));
assert(~any(cosmo_match(absent_labels,label(:))));
function props=get_senstype_properties()
props={{ 'biosemi64',...
'biosemi64','eeg',...
64,1,{'A1','B32'}},...
{'biosemi128',...
'biosemi128','eeg',...
128,1,{'A1','D32'}},...
{'biosemi256',...
'biosemi256','eeg',...
256,1,{'A1','H32'}},...
{'bti148',...
'bti148','meg_axial',...
148,1,{'A1','A148'}},...
{'bti148_planar',...
'bti148','meg_planar',...
148,2,{'A1_dH','A148_dV'}},...
{'bti148_planar_combined',...
'bti148','meg_planar_combined',...
148,1,{'A1','A148'},false},... % not required
{'bti248',...
'bti248','meg_axial',...
248,1,{'A1','A248'}},...
{'bti248_planar',...
'bti248','meg_planar',...
248,2,{'A1_dH','A248_dV'}},...
{'bti248_planar_combined',...
'bti248','meg_planar_combined',...
248,1,{'A1','A248'},false},... % not required
{'ctf151',...
'ctf151','meg_axial',...
151,1,{'MLC11','MZP02'}},...
{'ctf151_planar',...
'ctf151','meg_planar',...
151,2,{'MLC11_dH','MZP02_dV'}},...
{'ctf151_planar_combined',...
'ctf151','meg_planar_combined',...
151,1,{'MLC11','MZP02'}},...
{'ctf275',...
'ctf275','meg_axial',...
275,1,{'MLC11','MZP01'}},...
{'ctf275_planar',...
'ctf275','meg_planar',...
275,2,{'MLC11_dH','MZP01_dV'}},...
{'ctf275_planar_combined',...
'ctf275','meg_planar_combined',...
275,1,{'MLC11','MZP01'}},...
{'eeg1005',...
'ext1020','eeg',...
343,1,{'Fp1','T6'}},...
{'eeg1010',...
'ext1020','eeg',...
94,1,{'Fp1','T6'}},...
{'eeg1020',...
'ext1020','eeg',...
29,1,{'Fp1','T6'}},...
{'egi32',...
'egi32','eeg',...
34,1,{'E1','Cz'}},...
{'egi64',...
'egi64','eeg',...
66,1,{'E1','Cz'}},...
{'egi128',...
'egi128','eeg',...
130,1,{'E1','Cz'}},...
{'egi256',...
'egi256','eeg',...
258,1,{'E1','Cz'}},...
{'neuromag122_planar_combined',...
'neuromag122','meg_planar_combined',...
61,1,{'MEG 001+002','MEG 121+122'}},...
{'neuromag306_planar_combined',...
'neuromag306','meg_planar_combined',...
102,1,{'MEG 0112+0113','MEG 2642+2643'}},...
{'itab153',...
'itab153','meg',...
153,1,{'MAG_000','MAG_152'}},...
{'itab153_planar',...
'itab153','meg_planar',...
153,2,{'MAG_000_dH','MAG_152_dV'}},...
{'itab153_planar_combined',...
'itab153','meg_planar_combined',...
153,1,{'MAG_000','MAG_152'}},...
{'yokogawa64',...
'yokogawa64','meg_axial',...
64,1,{'AG001','AG064'}},...
{'yokogawa64_planar',...
'yokogawa64','meg_planar',...
64,2,{'AG001_dH','AG064_dV'}},...
{'yokogawa64_planar_combined',...
'yokogawa64','meg_planar_combined',...
64,1,{'AG001','AG064'}},...
{'yokogawa160',...
'yokogawa160','meg_axial',...
160,1,{'AG001','AG160'}},...
{'yokogawa160_planar',...
'yokogawa160','meg_planar',...
160,2,{'AG001_dH','AG160_dV'}},...
{'yokogawa160_planar_combined',...
'yokogawa160','meg_planar_combined',...
160,1,{'AG001','AG160'}},...
{'yokogawa440',...
'yokogawa440','meg_axial',...
412,1,{'AG001','RM412'}},...
{'yokogawa440_planar',...
'yokogawa440','meg_planar',...
210,2,{'AG001_dH','AG392_dV'}},...
{'yokogawa440_planar_combined',...
'yokogawa440','meg_planar_combined',...
210,1,{'AG001','AG392'}},...
{'neuromag122alt_planar_combined',...
'neuromag122','meg_planar_combined',...
61,1,{'MEG001+002','MEG121+122'}},...
{'neuromag306alt_planar_combined',...
'neuromag306','meg_planar_combined',...
102,1,{'MEG0112+0113','MEG2642+2643'}},...
{'neuromag306_planar',...
'neuromag306','meg_planar',...
102,2,{'MEG 0112','MEG 2643'}},...
{'neuromag306_mag',...
'neuromag306','meg_axial',...
102,1,{'MEG 0111','MEG 2641'}},...
{'neuromag306alt_planar',...
'neuromag306','meg_planar',...
102,2,{'MEG0112','MEG2643'}},...
{'neuromag306alt_mag',...
'neuromag306','meg_axial',...
102,1,{'MEG0111','MEG2641'}},...
{'neuromag122_planar',...
'neuromag122','meg_planar',...
61,2,{'MEG 001','MEG 122'}},...
{'neuromag122alt_planar',...
'neuromag122','meg_planar',...
61,2,{'MEG001','MEG122'}}};
% the data anobe was produced by the code below
%
% sc=cosmo_meeg_senstype_collection();
% names=fieldnames(sc);
%
% names={'biosemi64','biosemi128','biosemi256',...
% 'bti148','bti148_planar','bti148_planar_combined',...
% 'bti248','bti248_planar','bti248_planar_combined',...
% 'ctf151','ctf151_planar','ctf151_planar_combined',...
% 'ctf275','ctf275_planar','ctf275_planar_combined',...
% 'eeg1005','eeg1010','eeg1020',...
% 'egi32','egi64','egi128','egi256',...
% 'neuromag122_planar_combined',...
% 'neuromag306_planar_combined',...
% 'itab153','itab153_planar','itab153_planar_combined',...
% 'yokogawa64','yokogawa64_planar','yokogawa64_planar_combined',...
% 'yokogawa160','yokogawa160_planar',...
% 'yokogawa160_planar_combined',...
% 'yokogawa440','yokogawa440_planar',...
% 'yokogawa440_planar_combined',...
% 'neuromag122alt_planar_combined',...
% 'neuromag306alt_planar_combined',...
% 'neuromag306_planar',...
% 'neuromag306_mag',...
% 'neuromag306alt_planar',...
% 'neuromag306alt_mag',...
% 'neuromag122_planar',...
% 'neuromag122alt_planar'};
% for k=1:numel(names)
% name=names{k};
% s=sc.(name);
% fprintf(['{''%s'',...\n\t\t''%s'',''%s'',...\n\t\t'...
% '%d,%d,{''%s'',''%s''}},...\n'],...
% name,s.sens,s.type,size(s.label),s.label{1},s.label{end})
% end
%
